Welcome to Fred2’s documentation!

Welcome to the class and function documentation of FRED2.

Tutorials on how to use FRED2 can be found at:

https://github.com/FRED-2/Fred2/tree/master/Fred2/tutorials.

• Basic
  • Fred2.Core Module
    • Core.Allele
    • Core.Base
    • Core.Generator
    • Core.Peptide
    • Core.Protein
    • Core.Result
    • Core.Transcript
    • Core.Variant
  • Fred2.IO Module
    • IO.ADBAdapter
    • IO.EnsemblAdapter
    • IO.FileReader
    • IO.MartsAdapter
    • IO.RefSeqAdapter
    • IO.UniProtAdapter
• Prediction
  • Fred2.CleavagePrediction Module
    • CleavagePrediction.External
    • CleavagePrediction.PSSM
    • Module contents
  • Fred2.TAPPrediction Module
    • TAPPrediction.PSSM
    • TAPPrediction.SVM
    • Module contents
  • Fred2.EpitopePrediction Module
    • EpitopePrediction.External
    • EpitopePrediction.PSSM
    • EpitopePrediction.SVM
    • Module contents
• Vaccine Design
  • Fred2.EpitopeSelection Module
    • EpitopeSelection.OptiTope
  • Fred2.EpitopeAssembly Module
    • EpitopeAssembly.EpitopeAssembly
    • EpitopeAssembly.MosaicVaccine
• HLA Typing
  • Fred2.HLAtyping Module
    • HLAtyping.External

Indices and tables

• Index
• Module Index
• Search Page