Fred2
stable
  • Basic
    • Fred2.Core Module
    • Fred2.IO Module
  • Prediction
    • Fred2.CleavagePrediction Module
    • Fred2.TAPPrediction Module
    • Fred2.EpitopePrediction Module
  • Vaccine Design
    • Fred2.EpitopeSelection Module
    • Fred2.EpitopeAssembly Module
  • HLA Typing
    • Fred2.HLAtyping Module
Fred2
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  • Basic
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Basic¶

  • Fred2.Core Module
    • Core.Allele
    • Core.Base
    • Core.Generator
    • Core.Peptide
    • Core.Protein
    • Core.Result
    • Core.Transcript
    • Core.Variant
  • Fred2.IO Module
    • IO.ADBAdapter
    • IO.EnsemblAdapter
    • IO.FileReader
    • IO.MartsAdapter
    • IO.RefSeqAdapter
    • IO.UniProtAdapter

Prediction¶

  • Fred2.CleavagePrediction Module
    • CleavagePrediction.External
    • CleavagePrediction.PSSM
    • Module contents
  • Fred2.TAPPrediction Module
    • TAPPrediction.PSSM
    • TAPPrediction.SVM
    • Module contents
  • Fred2.EpitopePrediction Module
    • EpitopePrediction.External
    • EpitopePrediction.PSSM
    • EpitopePrediction.SVM
    • Module contents

Vaccine Design¶

  • Fred2.EpitopeSelection Module
    • EpitopeSelection.OptiTope
  • Fred2.EpitopeAssembly Module
    • EpitopeAssembly.EpitopeAssembly
    • EpitopeAssembly.MosaicVaccine

HLA Typing¶

  • Fred2.HLAtyping Module
    • HLAtyping.External
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